Calculating global dynamics of proteins in membranes
Contained here is the source code for the research appearing in Lezon and Bahar. Biophys J 102:1331. The paper used a computational model to explore the large-scale motion of the glutamate transporter, as shown in the cartoon below.
The code is essentially the in-house version, which means that it runs correctly and gives the user a good deal of control. Code was written and tested on a Linux machine.
The imANM code is also available in ProDy as membrANM.
Please send any questions or comments to Tim Lezon.
To unpack:$ tar -xzf imANM-1.0.tar.gz
For further instructions, refer to the README files.